EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

Edit your search query here and hit Return to execute it:

text:chlamydomonas* AND xref_links:"chembl" AND author_orcid:"0000-0002-3028-3203"

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Preview first 10

EMD-30925

Download Map 3D View

State transition supercomplex PSI-LHCI-LHCII from double phosphatase mutant pph1;pbcp of green alga Chlamydomonas reinhardtii

Release date: June 30, 2021
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 7dz7
Q-score: 0.567

Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, Liu Z, Minagawa J, Li M

Nat Plants (2021) 7 pp. 1119-1131 [ DOI: doi:10.1038/s41477-021-00960-8 Pubmed: 34239095 ]

Sample:

Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas smithii)
Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas smithii)
Photosystem i reaction center subunit iv, chloroplastic (10 kDa, Protein from Chlamydomonas smithii)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chlamydomonas smithii)
Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas smithii)
Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas smithii)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Chlamydomonas smithii)
Chlorophyll a (893 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Chlamydomonas smithii)
Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Chlamydomonas smithii)
Phylloquinone (450 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas smithii)
Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas smithii)
Chlorophyll b (907 Da, Ligand)
Psi subunit v (20 kDa, Protein from Chlamydomonas smithii)
Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas smithii)
Photosystem i subunit o (13 kDa, Protein from Chlamydomonas smithii)
Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas smithii)
State transition complex psi-lhci-lhcii from green algae (Complex from Chlamydomonas reinhardtii)
Dodecyl-alpha-d-maltoside (510 Da, Ligand)
Photosystem i reaction center subunit psak, chloroplastic (11 kDa, Protein from Chlamydomonas smithii)
Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas smithii)
Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Chlamydomonas smithii)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Photosystem i reaction center subunit viii (10 kDa, Protein from Chlamydomonas smithii)
Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas smithii)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas smithii)
Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas smithii)
Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas smithii)
Photosystem i reaction center subunit v, chloroplastic (13 kDa, Protein from Chlamydomonas smithii)
Iron/sulfur cluster (351 Da, Ligand)
Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Chlamydomonas smithii)
(1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas smithii)
Beta-carotene (536 Da, Ligand)

[Show more]

EMD-30926

Download Map 3D View

State transition supercomplex PSI-LHCI-LHCII from the LhcbM1 lacking mutant of Chlamydomonas reinhardtii

Release date: June 30, 2021
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 7dz8
Q-score: 0.518

Pan X, Tokutsu R, Li A, Takizawa K, Song C, Murata K, Yamasaki T, Liu Z, Minagawa J, Li M

Nat Plants (2021) 7 pp. 1119-1131 [ DOI: doi:10.1038/s41477-021-00960-8 Pubmed: 34239095 ]

Sample:

Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas smithii)
Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas smithii)
Photosystem i reaction center subunit iv, chloroplastic (10 kDa, Protein from Chlamydomonas smithii)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chlamydomonas smithii)
Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas smithii)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Chlamydomonas smithii)
Chlorophyll a (893 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Chlamydomonas smithii)
Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Chlamydomonas smithii)
Phylloquinone (450 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas smithii)
Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas smithii)
Chlorophyll b (907 Da, Ligand)
Psi subunit v (20 kDa, Protein from Chlamydomonas smithii)
Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas smithii)
Photosystem i subunit o (13 kDa, Protein from Chlamydomonas smithii)
Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas smithii)
State transition complex psi-lhci-lhcii from green algae (Complex from Chlamydomonas reinhardtii)
Dodecyl-alpha-d-maltoside (510 Da, Ligand)
Photosystem i reaction center subunit psak, chloroplastic (11 kDa, Protein from Chlamydomonas smithii)
Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas smithii)
Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Chlamydomonas smithii)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Photosystem i reaction center subunit viii (10 kDa, Protein from Chlamydomonas smithii)
Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas smithii)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas smithii)
Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas smithii)
Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas smithii)
Photosystem i reaction center subunit v, chloroplastic (13 kDa, Protein from Chlamydomonas smithii)
Iron/sulfur cluster (351 Da, Ligand)
Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Chlamydomonas smithii)
(1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Chlamydomonas smithii)
Beta-carotene (536 Da, Ligand)

[Show more]

EMD-9955

Download Map 3D View

Cryo-EM structure of the C2S2-type PSII-LHCII supercomplex from Chlamydomonas reihardtii

Release date: Oct. 23, 2019
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 6kac
Q-score: 0.569

Sheng X, Watanabe A, Li A, Kim E, Song C, Murata K, Song D, Minagawa J, Liu Z

Nat Plants (2019) 5 pp. 1320-1330 [ Pubmed: 31768031 DOI: doi:10.1038/s41477-019-0543-4 ]

Sample:

Chlorophyll a-b binding protein cp29 (29 kDa, Protein from Chlamydomonas reinhardtii)
4.1 kda photosystem ii subunit (9 kDa, Protein from Chlamydomonas reinhardtii)
Chloride ion (35 Da, Ligand)
Ca-mn4-o5 cluster (339 Da, Ligand)
Photosystem ii reaction center protein t (3 kDa, Protein from Chlamydomonas reinhardtii)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Predicted protein (19 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a (893 Da, Ligand)
Oxygen-evolving enhancer protein 1, chloroplastic (30 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein k (5 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein h (9 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (30 kDa, Protein from Chlamydomonas reinhardtii)
The c2s2-type psii-lhcii supercomplex (Complex from Chlamydomonas reinhardtii)
Bicarbonate ion (61 Da, Ligand)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
Protoporphyrin ix containing fe (616 Da, Ligand)
Photosystem ii reaction center w protein, chloroplastic (12 kDa, Protein from Chlamydomonas reinhardtii)
10 kda photosystem ii polypeptide psbr (potential) (1 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll b (907 Da, Ligand)
Cytochrome b559 subunit beta (4 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein l (4 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii d2 protein (39 kDa, Protein from Chlamydomonas reinhardtii)
Dodecyl-alpha-d-maltoside (510 Da, Ligand)
Photosystem ii reaction center protein i (4 kDa, Protein from Chlamydomonas reinhardtii)
Oxygen-evolving enhancer protein 3, chloroplastic (21 kDa, Protein from Chlamydomonas reinhardtii)
Water (18 Da, Ligand)
Unindentified stromal protein (usp) (2 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Chlamydomonas reinhardtii)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Oxygen-evolving enhancer protein 2, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
Pheophytin a (871 Da, Ligand)
Photosystem ii cp47 reaction center protein (56 kDa, Protein from Chlamydomonas reinhardtii)
Beta-carotene (536 Da, Ligand)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii cp43 reaction center protein (50 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein j (4 kDa, Protein from Chlamydomonas reinhardtii)
(1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Cytochrome b559 subunit alpha (9 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein z (6 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii protein d1 (39 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein m (3 kDa, Protein from Chlamydomonas reinhardtii)
Fe (ii) ion (55 Da, Ligand)

[Show more]

EMD-9956

Download Map 3D View

Cryo-EM structure of the C2S2M2L2-type PSII-LHCII supercomplex from Chlamydomonas reihardtii

Release date: Oct. 23, 2019
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6kad
Q-score: 0.447

Sheng X, Watanabe A, Li A, Kim E, Song C, Murata K, Song D, Minagawa J, Liu Z

Nat Plants (2019) 5 pp. 1320-1330 [ Pubmed: 31768031 DOI: doi:10.1038/s41477-019-0543-4 ]

Sample:

Chlorophyll a-b binding protein cp29 (29 kDa, Protein from Chlamydomonas reinhardtii)
4.1 kda photosystem ii subunit (9 kDa, Protein from Chlamydomonas reinhardtii)
Chloride ion (35 Da, Ligand)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Photosystem ii reaction center protein t (3 kDa, Protein from Chlamydomonas reinhardtii)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Chlorophyll a (893 Da, Ligand)
Photosystem ii cp43 reaction center protein (50 kDa, Protein from Chlamydomonas reinhardtii)
The c2s2m2l2-type psii-lhcii supercomplex (Complex from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein h (9 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (30 kDa, Protein from Chlamydomonas reinhardtii)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Bicarbonate ion (61 Da, Ligand)
Photosystem ii reaction center protein k (5 kDa, Protein from Chlamydomonas reinhardtii)
2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
Protoporphyrin ix containing fe (616 Da, Ligand)
Photosystem ii reaction center w protein, chloroplastic (12 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll b (907 Da, Ligand)
Cytochrome b559 subunit beta (4 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein l (4 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii d2 protein (39 kDa, Protein from Chlamydomonas reinhardtii)
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Ca-mn4-o5 cluster (339 Da, Ligand)
Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Chlamydomonas reinhardtii)
Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Oxygen-evolving enhancer protein 1, chloroplastic (30 kDa, Protein from Chlamydomonas reinhardtii)
Pheophytin a (871 Da, Ligand)
Photosystem ii cp47 reaction center protein (56 kDa, Protein from Chlamydomonas reinhardtii)
Beta-carotene (536 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein i (4 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein j (4 kDa, Protein from Chlamydomonas reinhardtii)
(1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Cytochrome b559 subunit alpha (9 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein z (6 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii protein d1 (39 kDa, Protein from Chlamydomonas reinhardtii)
Photosystem ii reaction center protein m (3 kDa, Protein from Chlamydomonas reinhardtii)
Fe (ii) ion (55 Da, Ligand)

[Show more]

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Preview first 10

Field: